Faculty of Education

Permanent URI for this community

https://ir2.lirauni.ac.ug/handle/123456789/28

Browse

Browsing Faculty of Education by Subject "Cajanus cajan"

Now showing 1 - 2 of 2
  • Thumbnail Image
    Item
    Development of sequence-based markers for seed protein content in pigeonpea
    (Molecular Genetics and Genomics, 2019) Obala, Jimmy; Saxena, Rachit K.; Singh, Vikas K.; Kumar, C. V. Sameer; Saxena, K. B.; Tongoona, Pangirayi; Sibiya, Julia; Varshney, Rajeev K.
    Pigeonpea is an important source of dietary protein to over a billion people globally, but genetic enhancement of seed protein content (SPC) in the crop has received limited attention for a long time. Use of genomics-assisted breeding would facilitate accelerating genetic gain for SPC. However, neither genetic markers nor genes associated with this important trait have been identified in this crop. Therefore, the present study exploited whole genome re-sequencing (WGRS) data of four pigeonpea genotypes (~ 12X coverage) to identify sequence-based markers and associated candidate genes for SPC. By combining a common variant filtering strategy on available WGRS data with knowledge of gene functions in relation to SPC, 108 sequence variants from 57 genes were identified. These genes were assigned to 19 GO molecular function categories with 56% belonging to only two categories. Furthermore, Sanger sequencing confirmed presence of 75.4% of the variants in 37 genes. Out of 30 sequence variants converted into CAPS/dCAPS markers, 17 showed high level of polymorphism between low and high SPC genotypes. Assay of 16 of the polymorphic CAPS/dCAPS markers on an F2 population of the cross ICP 5529 (high SPC)×ICP 11605 (low SPC), resulted in four of the CAPS/dCAPS markers significantly (P<0.05) co-segregated with SPC. In summary, four markers derived from mutations in four genes will be useful for enhancing/regulating SPC in pigeonpea crop improvement programs
  • Thumbnail Image
    Item
    Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.)
    (Australian Journal of Crop Science, 2018) Obala, Jimmy; Saxena, Rachit K.; Singh, Vikas K.; Vechalapu, Suryanarayana; Das, Roma; Rathore, Abhishek; Sameer-Kumar, Chanda V; Saxena, Kulbhushan; Tongoona, Pangirayi; Sibiya, Julia; Varshney, Rajeev K.
    Seed protein content (SPC) is an important grain quality trait, which impacts the nutritional importance of pigeonpea seed in the diet of over a billion people globally. The present study was carried out to determine variation in SPC and its relationships with some agronomic traits among 23 parental lines of different types of pigeonpea mapping populations. The parental lines were evaluated under field conditions during 2014-2015 growing season. A randomised complete block design in two replications was used. Data were recorded on SPC, days to first flower (DTF), plant height at maturity (PltH), number of pods per plant (NPP), number of seeds per pod (NSP), hundred-seed weight (SW) and seed yield per plant (SY). There were significant differences among genotypes for all traits. Broad-sense heritability was 0.693 for SPC but ranged from 0.519 (NPP) to 0.999 (DTF) while genetic advance was 2.4% for SPC but ranged from 1.2 % (NSP) to 141.2 % (SY), and genetic gain ranged from 11.0 % (SPC) to 230.0 % (SY). Simple correlation showed that SPC is only significantly but negatively correlated with SW (r = -0.30, P < 0.05), while path analyses revealed that SPC is negatively associated SW and NPP but positively with DTF, PltH, NSP and SY. It is concluded that genetic variation for SPC and agronomic traits exist among pigeonpea genotypes studied. The variation is accompanied by both favourable and unfavourable relationships of SPC with the agronomic traits.